Installation

Ruffus is a lightweight python module for building computational pipelines.

Note

Ruffus requires Python 3.0 or higher, python 2 is no longer supported but older versions will still be python 2 compatible.

conda installation

The recomended method for installing CGAT-ruffus is to install using conda through the bioconda channel. The reson for conda being the prefferred method is that the dependancied are taken care of.

conda install -c bioconda ruffus

pip installation

Ruffus is also available on pypi.

pip install ruffus

Manual installation

To obtain the latest code, check it out from github and activate it.

git clone https://github.com/cgat-developers/ruffus.git
cd ruffus
python setup.py install